Details
-
Type:
Epic
-
Status: Closed
-
Priority:
Major
-
Resolution: Fixed
-
Affects Version/s: None
-
Fix Version/s: None
-
Component/s: Checklistbank
-
Labels:
-
Epic Name:Write new integrated backbone building
Description
A migrated, refactored and improved backbone building algorithm for the checklistbank multi module project. A detailed plan still needs to be made, but this epic will be used to already group known issues
Gliffy Diagrams
Issue Links
- blocks
-
POR-2856
indet checklist species and strains are matched to their genus
-
- Open
-
-
POR-2272
Avian Sakesphorus taxa
-
- Open
-
-
POR-1373
Very common plant genera lacking classification
-
- Closed
-
-
POR-2027
Leersia has incorrect classification
-
- Closed
-
-
POR-2035
Tridacnid seems to be Bivalvia but shows in Gasteropoda
-
- Closed
-
-
POR-2779
IPNI Backbone returning Animalia
-
- Closed
-
-
POR-1422
Plant genus Howea missing in nub
-
- Closed
-
-
POR-2030
Backbone taxonomy missing Andinobates
-
- Closed
-
-
POR-2810
Genus Hofstenia in wrong backbone phylum
-
- Closed
-
-
POR-3029
Improve Backbone Building August 2016
-
- Closed
-
-
POR-2745
Verify taxonomic groups included in the Fish species filter
-
- Open
-
-
POR-2322
Duplicate taxa in backbone
-
- Open
-
-
PF-2396
Umlaut error in author name
- Closed
-
PF-2397
Duplicate taxon in GBIF backbone taxonomy
- Closed
- is blocked by
-
POR-2872
Pro parte usages need several nub ids assigned
-
- Resolved
-
-
POR-3032
usage issues not synced from nub build
-
- Closed
-
- relates to
-
DM-248
Decide which bird taxonomy to follow
-
- Open
-
-
DM-143
Try to get the global plant list publish their data
-
- Closed
-
Issues in Epic
|
|
POR-481 | Nub dataset description needs to be updated with every nub build |
|
Closed | Unassigned | |
|
|
POR-284 | Nub creates duplicates for names with diacritic marks |
|
Closed | Markus Döring | |
|
|
POR-405 | Block IRMNG genera without child species |
|
Resolved | Markus Döring | |
|
|
POR-398 | Merge species by their epithet and authorship |
|
Resolved | Markus Döring | |
|
|
POR-2441 | Write NubMatching clb indexing CLI |
|
Resolved | Markus Döring | |
|
|
DM-244 | Select backbone sources |
|
Closed | Markus Döring | |
|
|
POR-2785 | Display backbone sources in portal |
|
Closed | Markus Döring | |
|
|
POR-2786 | Assign stable ids to nub usages |
|
Resolved | Markus Döring | |
|
|
POR-2788 | Allow publishers to be tagged as backbone sources |
|
Resolved | Unassigned | |
|
|
POR-2815 | Flag backbone usages that should be a recombination |
|
Resolved | Markus Döring | |
|
|
POR-2816 | Create new backbone dwca archive |
|
Closed | Markus Döring | |
|
|
DM-253 | Decide on license to use for GBIF backbone dataset |
|
Closed | Markus Döring | |
|
|
POR-2824 | nub builder should use gender neutral epithets to discover basionyms |
|
Closed | Unassigned | |
|
|
POR-2854 | Deal with taxon concepts in nub build |
|
Resolved | Markus Döring | |
|
|
POR-2874 | Pick one accepted name for the same canonical |
|
Closed | Markus Döring | |
|
|
POR-2877 | Do not attach an authorship to names of orders or above |
|
Closed | Unassigned | |
|
|
POR-2986 | Verify new backbone is acceptable for production |
|
Closed | Markus Döring | |
|
|
POR-2990 | Incertae sedis synonyms wrongly moved during nub builds |
|
Closed | Markus Döring | |
|
|
POR-3003 | Nub builds have usage keys from postgres sequence |
|
Closed | Markus Döring | |
|
|
POR-3022 | Match to synonym homonym if accepted name is the same |
|
Closed | Unassigned | |
|
|
POR-3023 | ignore ex author in nub builds |
|
Closed | Unassigned | |
|
|
POR-3024 | New NUB usages without authors (regression) |
|
Closed | Markus Döring | |
|
|
POR-3026 | NUB usage has lost author and classification, new usage has it |
|
Closed | Markus Döring | |
|
|
POR-3060 | Backbone ids not stable after builds |
|
Closed | Markus Döring | |
|
|
POR-3063 | Repeated genera names in new backbone |
|
Closed | Markus Döring | |
|
|
POR-3064 | Oenanthe sarmentosa Presl ex DC. exists twice |
|
Closed | Markus Döring | |
|
|
POR-3069 | Some infraspecific nub names contain "null" epithets |
|
Closed | Markus Döring | |
|
|
POR-3070 | Genus Abaxisotima exists twice |
|
Closed | Markus Döring |
Activity
| Field | Original Value | New Value |
|---|---|---|
| Epic Child |
|
| Epic Child |
|
| Epic Child | POR-2322 [ 16125 ] |
| Epic Child | POR-2272 [ 16037 ] |
| Epic Child |
|
| Epic Child |
|
| Epic Child |
|
| Epic Child |
|
| Epic Child | POR-1389 [ 14473 ] |
| Epic Child |
|
| Epic Child |
|
| Epic Child |
|
| Assignee | Markus Döring [ mdoering@gbif.org ] | |
| Status | Open [ 1 ] | In Progress [ 3 ] |
| Epic Child |
|
| Epic Child |
|
| Epic Child |
|
| Epic Child |
|
| Epic Child |
|
| Epic Child | POR-1389 [ 14473 ] |
| Epic Child |
|
| Epic Child |
|
| Epic Child | POR-2272 [ 16037 ] |
| Epic Child | POR-2322 [ 16125 ] |
| Epic Child |
|
| Epic Child | POR-358 [ 10617 ] |
| Epic Child |
|
| Epic Child | POR-2789 [ 17689 ] |
| Epic Child |
|
| Epic Child |
|
| Epic Child |
|
| Epic Child | POR-2818 [ 17762 ] |
| Epic Child |
|
| Epic Child |
|
| Epic Child |
|
| Epic Child |
|
| Epic Child | POR-2868 [ 17870 ] |
| Epic Child |
|
| Epic Child | POR-307 [ 13637 ] |
| Epic Child |
|
| Epic Child |
|
| Epic Child |
|
| Epic Child |
|
| Epic Child |
|
| Epic Child |
|
| Epic Child |
|
| Epic Child |
|
| Epic Child |
|
| Epic Child |
|
| Epic Child | POR-358 [ 10617 ] |
| Epic Child | POR-307 [ 13637 ] |
| Epic Child | POR-2868 [ 17870 ] |
| Epic Child | POR-2818 [ 17762 ] |
| Epic Child |
|
| Epic Child | POR-2789 [ 17689 ] |
| Epic Child |
|
| Epic Child |
|
| Epic Child |
|
| Epic Child |
|
| Epic Child |
|
| Epic Child |
|
| Epic Child |
|
| Epic Child |
|
| Epic Child |
|
| Resolution | Fixed [ 1 ] | |
| Status | In Progress [ 3 ] | Closed [ 6 ] |