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  1. Portal
  2. POR-2815

Flag backbone usages that should be a recombination

    Details

    • Type: New Feature New Feature
    • Status: Resolved
    • Priority: Major Major
    • Resolution: Fixed
    • Affects Version/s: None
    • Fix Version/s: None
    • Component/s: None
    • Labels:

      Description

      See Rods gist: http://gist.neo4j.org/?dae6d15551eda2d7ca12

      Because you can only move a species to a genus that has been named, it follows that if a species is described before the genus name was published, then if the species is in that newer genus the authorship must be in parentheses. For example, the lepidopteran genus Heliopyrgus was published in 1957, and includes the species willi Plötz, 1884. Since this species was described before 1957, it must have been originally placed in a different genus, and so the species name should be Heliopyrgus willi (Plötz, 1884). However, GBIF has this as Heliopyrgus willi Plötz, 1884 (no parentheses).

      Add some post build checks to the nub generator that flags those usages and adds a new NameUsageIssue.DOUBTFUL_ORIGINAL_NAME

        Gliffy Diagrams

          Activity

          Show
          Markus Döring added a comment - Good example: http://www.gbif.org/species/search?q=Heliopyrgus+domicella as recombination in ION: http://www.organismnames.com/details.htm?lsid=1515439
          Show
          Markus Döring added a comment - https://github.com/gbif/checklistbank/commit/19fe4783ac6015ea8b8b831b88e1ed002bbf666f test: https://github.com/gbif/checklistbank/commit/a546ff77857678d0a9dc926292241d334dc4cd87
          Hide
          Markus Döring added a comment -

          Roderic D. M. Page the latest new backbone flags 5110 names being published earlier than their genus:
          http://www.gbif-uat.org/species/search?dataset_key=d7dddbf4-2cf0-4f39-9b2a-bb099caae36c&issue=PUBLISHED_BEFORE_GENUS

          Thanks for the idea!

          Show
          Markus Döring added a comment - Roderic D. M. Page the latest new backbone flags 5110 names being published earlier than their genus: http://www.gbif-uat.org/species/search?dataset_key=d7dddbf4-2cf0-4f39-9b2a-bb099caae36c&issue=PUBLISHED_BEFORE_GENUS Thanks for the idea!
          Hide
          Roderic D. M. Page added a comment -

          Markus Döring You're welcome! Any plans to display taxon issues in species pages (in the same way that occurrences have issue flags displayed). Would single to user that GBIF "knows" that there is a problem.

          Show
          Roderic D. M. Page added a comment - Markus Döring You're welcome! Any plans to display taxon issues in species pages (in the same way that occurrences have issue flags displayed). Would single to user that GBIF "knows" that there is a problem.
          Hide
          Markus Döring added a comment -

          Good idea Rod, no idea why we did not show those before.
          I've added them to the bottom of the species page for now:
          https://github.com/gbif/portal-web/commit/45841e702c4e3a1f66c4b8fa08782dca0fb7aac0

          Show
          Markus Döring added a comment - Good idea Rod, no idea why we did not show those before. I've added them to the bottom of the species page for now: https://github.com/gbif/portal-web/commit/45841e702c4e3a1f66c4b8fa08782dca0fb7aac0

            People

            • Assignee:
              Markus Döring
              Reporter:
              Markus Döring
            • Votes:
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              Dates

              • Created:
                Updated:
                Resolved: