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  1. Portal
  2. POR-2856

indet checklist species and strains are matched to their genus

    Details

    • Type: Bug Bug
    • Status: Open
    • Priority: Critical Critical
    • Resolution: Unresolved
    • Affects Version/s: None
    • Fix Version/s: None
    • Component/s: Checklistbank

      Description

      Checklist Bank claims to have over 41000 records for Lepidoptera in NCBI alone: http://www.gbif.org/species/search?q=Lepidoptera&dataset_key=fab88965-e69d-4491-a04d-e3198b626e52

      These are mostly undetermined species or strain names and should not be matched to the genus backbone record but rather to nothing.

      The new author aware nub matching used for checklists should fix this issue, but until it is live (requires new nub) this issue should be kept open

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          Markus Döring added a comment - - edited

          There are 142 nubKeys that return more than 500 usages from a single dataset.
          As an immediate remedy I am removing those relations, nearly all come from NCBI and are the same issue.

          Here are the non NCBI ones (datasetKey, nubKey, counts):

          16c3f9cb-4b19-4553-ac8e-ebb90003aa02 | 797 | 1632 (wikipedia)
          672aca30-f1b5-43d3-8a2b-c1606125fa1b | 9456 | 1252 (Mammal Species of the World)
          672aca30-f1b5-43d3-8a2b-c1606125fa1b | 5510 | 918
          672aca30-f1b5-43d3-8a2b-c1606125fa1b | 9614 | 525
          16c3f9cb-4b19-4553-ac8e-ebb90003aa02 | 2770879 | 533
          34a96ebe-e51c-4222-9d08-5c2043c39dec | 1626096 | 654 (GNUB)

          Show
          Markus Döring added a comment - - edited There are 142 nubKeys that return more than 500 usages from a single dataset. As an immediate remedy I am removing those relations, nearly all come from NCBI and are the same issue. Here are the non NCBI ones (datasetKey, nubKey, counts): 16c3f9cb-4b19-4553-ac8e-ebb90003aa02 | 797 | 1632 (wikipedia) 672aca30-f1b5-43d3-8a2b-c1606125fa1b | 9456 | 1252 (Mammal Species of the World) 672aca30-f1b5-43d3-8a2b-c1606125fa1b | 5510 | 918 672aca30-f1b5-43d3-8a2b-c1606125fa1b | 9614 | 525 16c3f9cb-4b19-4553-ac8e-ebb90003aa02 | 2770879 | 533 34a96ebe-e51c-4222-9d08-5c2043c39dec | 1626096 | 654 (GNUB)

            People

            • Assignee:
              Unassigned
              Reporter:
              Markus Döring
            • Votes:
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              Dates

              • Created:
                Updated: