Issue 15643

Registry metasync mapreduce failed with NPE

15643
Reporter: omeyn
Type: Bug
Summary: Registry metasync mapreduce failed with NPE
Priority: Critical
Status: Open
Created: 2014-05-23 15:44:48.381
Updated: 2015-03-02 15:40:32.648
        
Description: Jan changed the owning org of a dataset in production and subsequent auto sync failed. Job id was:

job_201405090940_10331

Trace is:

2014-05-23 15:37:32,050 WARN mapreduce.Counters: Group org.apache.hadoop.mapred.Task$Counter is deprecated. Use org.apache.hadoop.mapreduce.TaskCounter instead
2014-05-23 15:37:33,985 WARN org.apache.hadoop.conf.Configuration: session.id is deprecated. Instead, use dfs.metrics.session-id
2014-05-23 15:37:33,987 INFO org.apache.hadoop.metrics.jvm.JvmMetrics: Initializing JVM Metrics with processName=MAP, sessionId=
2014-05-23 15:37:34,085 WARN org.apache.hadoop.conf.Configuration: slave.host.name is deprecated. Instead, use dfs.datanode.hostname
2014-05-23 15:37:34,549 INFO org.apache.hadoop.util.ProcessTree: setsid exited with exit code 0
2014-05-23 15:37:34,566 INFO org.apache.hadoop.mapred.Task:  Using ResourceCalculatorPlugin : org.apache.hadoop.util.LinuxResourceCalculatorPlugin@1881963d
2014-05-23 15:37:36,592 INFO org.gbif.registry.ws.client.DatasetWsClient: Creating new DatasetWsClient using webservices at http://apps.gbif.org:8080/a_registry-ws/dataset
2014-05-23 15:37:36,593 INFO org.gbif.registry.ws.client.OrganizationWsClient: Creating new OrganizationWsClient using webservices at http://apps.gbif.org:8080/a_registry-ws/organization
2014-05-23 15:37:37,952 INFO org.apache.zookeeper.ZooKeeper: Client environment:zookeeper.version=3.4.5-cdh4.3.0--1, built on 05/20/2013 20:55 GMT
2014-05-23 15:37:37,952 INFO org.apache.zookeeper.ZooKeeper: Client environment:host.name=c4n1.gbif.org
2014-05-23 15:37:37,952 INFO org.apache.zookeeper.ZooKeeper: Client environment:java.version=1.7.0_45
2014-05-23 15:37:37,952 INFO org.apache.zookeeper.ZooKeeper: Client environment:java.vendor=Oracle Corporation
2014-05-23 15:37:37,952 INFO org.apache.zookeeper.ZooKeeper: Client environment:java.home=/usr/lib/jvm/java-1.7.0-openjdk-1.7.0.45.x86_64/jre
2014-05-23 15:37:37,953 INFO org.apache.zookeeper.ZooKeeper: Client environment:java.class.path=/var/run/cloudera-scm-agent/process/4835-mapreduce-TASKTRACKER:/etc/alternatives/java_sdk/lib/tools.jar:/opt/cloudera/parcels/CDH-4.3.0-1.cdh4.3.0.p0.22/lib/hadoop-0.20-mapreduce:/opt/cloudera/parcels/CDH-4.3.0-1.cdh4.3.0.p0.22/lib/hadoop-0.20-mapreduce/hadoop-core-2.0.0-mr1-cdh4.3.0.jar:/opt/cloudera/parcels/CDH-4.3.0-1.cdh4.3.0.p0.22/lib/hadoop-0.20-mapreduce/lib/activation-1.1.jar:/opt/cloudera/parcels/CDH-4.3.0-1.cdh4.3.0.p0.22/lib/hadoop-0.20-mapreduce/lib/ant-contrib-1.0b3.jar:/opt/cloudera/parcels/CDH-4.3.0-1.cdh4.3.0.p0.22/lib/hadoop-0.20-mapreduce/lib/asm-3.2.jar:/opt/cloudera/parcels/CDH-4.3.0-1.cdh4.3.0.p0.22/lib/hadoop-0.20-mapreduce/lib/avro-1.7.4.jar:/opt/cloudera/parcels/CDH-4.3.0-1.cdh4.3.0.p0.22/lib/hadoop-0.20-mapreduce/lib/avro-compiler-1.7.4.jar:/opt/cloudera/parcels/CDH-4.3.0-1.cdh4.3.0.p0.22/lib/hadoop-0.20-mapreduce/lib/commons-beanutils-1.7.0.jar:/opt/cloudera/parcels/CDH-4.3.0-1.cdh4.3.0.p0.22/lib/hadoop-0.20-mapreduce/lib/commons-beanutils-core-1.8.0.jar:/opt/cloudera/parcels/CDH-4.3.0-1.cdh4.3.0.p0.22/lib/hadoop-0.20-mapreduce/lib/commons-cli-1.2.jar:/opt/cloudera/parcels/CDH-4.3.0-1.cdh4.3.0.p0.22/lib/hadoop-0.20-mapreduce/lib/commons-codec-1.4.jar:/opt/cloudera/parcels/CDH-4.3.0-1.cdh4.3.0.p0.22/lib/hadoop-0.20-mapreduce/lib/commons-collections-3.2.1.jar:/opt/cloudera/parcels/CDH-4.3.0-1.cdh4.3.0.p0.22/lib/hadoop-0.20-mapreduce/lib/commons-compress-1.4.1.jar:/opt/cloudera/parcels/CDH-4.3.0-1.cdh4.3.0.p0.22/lib/hadoop-0.20-mapreduce/lib/commons-configuration-1.6.jar:/opt/cloudera/parcels/CDH-4.3.0-1.cdh4.3.0.p0.22/lib/hadoop-0.20-mapreduce/lib/commons-digester-1.8.jar:/opt/cloudera/parcels/CDH-4.3.0-1.cdh4.3.0.p0.22/lib/hadoop-0.20-mapreduce/lib/commons-el-1.0.jar:/opt/cloudera/parcels/CDH-4.3.0-1.cdh4.3.0.p0.22/lib/hadoop-0.20-mapreduce/lib/commons-httpclient-3.1.jar:/opt/cloudera/parcels/CDH-4.3.0-1.cdh4.3.0.p0.22/lib/hadoop-0.20-mapreduce/lib/commons-io-2.1.jar:/opt/cloudera/parcels/CDH-4.3.0-1.cdh4.3.0.p0.22/lib/hadoop-0.20-mapreduce/lib/commons-lang-2.5.jar:/opt/cloudera/parcels/CDH-4.3.0-1.cdh4.3.0.p0.22/lib/hadoop-0.20-mapreduce/lib/commons-logging-1.1.1.jar:/opt/cloudera/parcels/CDH-4.3.0-1.cdh4.3.0.p0.22/lib/hadoop-0.20-mapreduce/lib/commons-math-2.1.jar:/opt/cloudera/parcels/CDH-4.3.0-1.cdh4.3.0.p0.22/lib/hadoop-0.20-mapreduce/lib/commons-net-3.1.jar:/opt/cloudera/parcels/CDH-4.3.0-1.cdh4.3.0.p0.22/lib/hadoop-0.20-mapreduce/lib/guava-11.0.2.jar:/opt/cloudera/parcels/CDH-4.3.0-1.cdh4.3.0.p0.22/lib/hadoop-0.20-mapreduce/lib/hadoop-fairscheduler-2.0.0-mr1-cdh4.3.0.jar:/opt/cloudera/parcels/CDH-4.3.0-1.cdh4.3.0.p0.22/lib/hadoop-0.20-mapreduce/lib/hsqldb-1.8.0.10.jar:/opt/cloudera/parcels/CDH-4.3.0-1.cdh4.3.0.p0.22/lib/hadoop-0.20-mapreduce/lib/jackson-core-asl-1.8.8.jar:/opt/cloudera/parcels/CDH-4.3.0-1.cdh4.3.0.p0.22/lib/hadoop-0.20-mapreduce/lib/jackson-jaxrs-1.8.8.jar:/opt/cloudera/parcels/CDH-4.3.0-1.cdh4.3.0.p0.22/lib/hadoop-0.20-mapreduce/lib/jackson-mapper-asl-1.8.8.jar:/opt/cloudera/parcels/CDH-4.3.0-1.cdh4.3.0.p0.22/lib/hadoop-0.20-mapreduce/lib/jackson-xc-1.8.8.jar:/opt/cloudera/parcels/CDH-4.3.0-1.cdh4.3.0.p0.22/lib/hadoop-0.20-mapreduce/lib/jasper-compiler-5.5.23.jar:/opt/cloudera/parcels/CDH-4.3.0-1.cdh4.3.0.p0.22/lib/hadoop-0.20-mapreduce/lib/jasper-runtime-5.5.23.jar:/opt/cloudera/parcels/CDH-4.3.0-1.cdh4.3.0.p0.22/lib/hadoop-0.20-mapreduce/lib/jaxb-api-2.2.2.jar:/opt/cloudera/parcels/CDH-4.3.0-1.cdh4.3.0.p0.22/lib/hadoop-0.20-mapreduce/lib/jaxb-impl-2.2.3-1.jar:/opt/cloudera/parcels/CDH-4.3.0-1.cdh4.3.0.p0.22/lib/hadoop-0.20-mapreduce/lib/jersey-core-1.8.jar:/opt/cloudera/parcels/CDH-4.3.0-1.cdh4.3.0.p0.22/lib/hadoop-0.20-mapreduce/lib/jersey-json-1.8.jar:/opt/cloudera/parcels/CDH-4.3.0-1.cdh4.3.0.p0.22/lib/hadoop-0.20-mapreduce/lib/jersey-server-1.8.jar:/opt/cloudera/parcels/CDH-4.3.0-1.cdh4.3.0.p0.22/lib/hadoop-0.20-mapreduce/lib/jets3t-0.6.1.jar:/opt/cloudera/parcels/CDH-4.3.0-1.cdh4.3.0.p0.22/lib/hadoop-0.20-mapreduce/lib/jettison-1.1.jar:/opt/cloudera/parcels/CDH-4.3.0-1.cdh4.3.0.p0.22/lib/hadoop-0.20-mapreduce/lib/jetty-6.1.26.cloudera.2.jar:/opt/cloudera/parcels/CDH-4.3.0-1.cdh4.3.0.p0.22/lib/hadoop-0.20-mapreduce/lib/jetty-util-6.1.26.cloudera.2.jar:/opt/cloudera/parcels/CDH-4.3.0-1.cdh4.3.0.p0.22/lib/hadoop-0.20-mapreduce/lib/jline-0.9.94.jar:/opt/cloudera/parcels/CDH-4.3.0-1.cdh4.3.0.p0.22/lib/hadoop-0.20-mapreduce/lib/jsch-0.1.42.jar:/opt/cloudera/parcels/CDH-4.3.0-1.cdh4.3.0.p0.22/lib/hadoop-0.20-mapreduce/lib/jsp-api-2.1.jar:/opt/cloudera/parcels/CDH-4.3.0-1.cdh4.3.0.p0.22/lib/hadoop-0.20-mapreduce/lib/jsr305-1.3.9.jar:/opt/cloudera/parcels/CDH-4.3.0-1.cdh4.3.0.p0.22/lib/hadoop-0.20-mapreduce/lib/junit-4.8.2.jar:/opt/cloudera/parcels/CDH-4.3.0-1.cdh4.3.0.p0.22/lib/hadoop-0.20-mapreduce/lib/kfs-0.2.2.jar:/opt/cloudera/parcels/CDH-4.3.0-1.cdh4.3.0.p0.22/lib/hadoop-0.20-mapreduce/lib/kfs-0.3.jar:/opt/cloudera/parcels/CDH-4.3.0-1.cdh4.3.0.p0.22/lib/hadoop-0.20-mapreduce/lib/log4j-1.2.17.jar:/opt/cloudera/parcels/CDH-4.3.0-1.cdh4.3.0.p0.22/lib/hadoop-0.20-mapreduce/lib/mockito-all-1.8.5.jar:/opt/cloudera/parcels/CDH-4.3.0-1.cdh4.3.0.p0.22/lib/hadoop-0.20-mapreduce/lib/paranamer-2.3.jar:/opt/cloudera/parcels/CDH-4.3.0-1.cdh4.3.0.p0.22/lib/hadoop-0.20-mapreduce/lib/protobuf-java-2.4.0a.jar:/opt/cloudera/parcels/CDH-4.3.0-1.cdh4.3.0.p0.22/lib/hadoop-0.20-mapreduce/lib/servlet-api-2.5.jar:/opt/cloudera/parcels/CDH-4.3.0-1.cdh4.3.0.p0.22/lib/hadoop-0.20-mapreduce/lib/slf4j-api-1.6.1.jar:/opt/cloudera/parcels/CDH-4.3.0-1.cdh4.3.0.p0.22/lib/hadoop-0.20-mapreduce/lib/snappy-java-1.0.4.1.jar:/opt/cloudera/parcels/CDH-4.3.0-1.cdh4.3.0.p0.22/lib/hadoop-0.20-mapreduce/lib/stax-api-1.0.1.jar:/opt/cloudera/parcels/CDH-4.3.0-1.cdh4.3.0.p0.22/lib/hadoop-0.20-mapreduce/lib/xmlenc-0.52.jar:/opt/cloudera/parcels/CDH-4.3.0-1.cdh4.3.0.p0.22/lib/hadoop-0.20-mapreduce/lib/xz-1.0.jar:/opt/cloudera/parcels/CDH-4.3.0-1.cdh4.3.0.p0.22/lib/hadoop-0.20-mapreduce/lib/zookeeper-3.4.5-cdh4.3.0.jar:/opt/cloudera/parcels/CDH-4.3.0-1.cdh4.3.0.p0.22/lib/hadoop-0.20-mapreduce/lib/jsp-2.1/jsp-2.1.jar:/opt/cloudera/parcels/CDH-4.3.0-1.cdh4.3.0.p0.22/lib/hadoop-0.20-mapreduce/lib/jsp-2.1/jsp-api-2.1.jar:/usr/share/cmf/lib/plugins/tt-instrumentation-4.8.0.jar:/usr/share/cmf/lib/plugins/event-publish-4.8.0-shaded.jar:/usr/share/cmf/lib/plugins/navigator-plugin-4.8.0-shaded.jar:/opt/cloudera/parcels/CDH-4.3.0-1.cdh4.3.0.p0.22/lib/hadoop-hdfs/lib/xmlenc-0.52.jar:/opt/cloudera/parcels/CDH-4.3.0-1.cdh4.3.0.p0.22/lib/hadoop-hdfs/lib/zookeeper-3.4.5-cdh4.3.0.jar:/opt/cloudera/parcels/CDH-4.3.0-1.cdh4.3.0.p0.22/lib/hadoop-hdfs/lib/commons-cli-1.2.jar:/opt/cloudera/parcels/CDH-4.3.0-1.cdh4.3.0.p0.22/lib/hadoop-hdfs/lib/jackson-mapper-asl-1.8.8.jar:/opt/cloudera/parcels/CDH-4.3.0-1.cdh4.3.0.p0.22/lib/hadoop-hdfs/lib/jackson-core-asl-1.8.8.jar:/opt/cloudera/parcels/CDH-4.3.0-1.cdh4.3.0.p0.22/lib/hadoop-hdfs/lib/jline-0.9.94.jar:/opt/cloudera/parcels/CDH-4.3.0-1.cdh4.3.0.p0.22/lib/hadoop-hdfs/lib/servlet-api-2.5.jar:/opt/cloudera/parcels/CDH-4.3.0-1.cdh4.3.0.p0.22/lib/hadoop-hdfs/lib/jersey-server-1.8.jar:/opt/cloudera/parcels/CDH-4.3.0-1.cdh4.3.0.p0.22/lib/hadoop-hdfs/lib/protobuf-java-2.4.0a.jar:/opt/cloudera/parcels/CDH-4.3.0-1.cdh4.3.0.p0.22/lib/hadoop-hdfs/lib/commons-codec-1.4.jar:/opt/cloudera/parcels/CDH-4.3.0-1.cdh4.3.0.p0.22/lib/hadoop-hdfs/lib/log4j-1.2.17.jar:/opt/cloudera/parcels/CDH-4.3.0-1.cdh4.3.0.p0.22/lib/hadoop-hdfs/lib/jetty-util-6.1.26.cloudera.2.jar:/opt/cloudera/parcels/CDH-4.3.0-1.cdh4.3.0.p0.22/lib/hadoop-hdfs/lib/jsp-api-2.1.jar:/opt/cloudera/parcels/CDH-4.3.0-1.cdh4.3.0.p0.22/lib/hadoop-hdfs/lib/asm-3.2.jar:/opt/cloudera/parcels/CDH-4.3.0-1.cdh4.3.0.p0.22/lib/hadoop-hdfs/lib/commons-el-1.0.jar:/opt/cloudera/parcels/CDH-4.3.0-1.cdh4.3.0.p0.22/lib/hadoop-hdfs/lib/commons-logging-1.1.1.jar:/opt/cloudera/parcels/CDH-4.3.0-1.cdh4.3.0.p0.22/lib/hadoop-hdfs/lib/jetty-6.1.26.cloudera.2.jar:/opt/cloudera/parcels/CDH-4.3.0-1.cdh4.3.0.p0.22/lib/hadoop-hdfs/lib/jsr305-1.3.9.jar:/opt/cloudera/parcels/CDH-4.3.0-1.cdh4.3.0.p0.22/lib/hadoop-hdfs/lib/jersey-core-1.8.jar:/opt/cloudera/parcels/CDH-4.3.0-1.cdh4.3.0.p0.22/lib/hadoop-hdfs/lib/commons-daemon-1.0.3.jar:/opt/cloudera/parcels/CDH-4.3.0-1.cdh4.3.0.p0.22/lib/hadoop-hdfs/lib/jasper-runtime-5.5.23.jar:/opt/cloudera/parcels/CDH-4.3.0-1.cdh4.3.0.p0.22/lib/hadoop-hdfs/lib/guava-11.0.2.jar:/opt/cloudera/parcels/CDH-4.3.0-1.cdh4.3.0.p0.22/lib/hadoop-hdfs/lib/commons-io-2.1.jar:/opt/cloudera/parcels/CDH-4.3.0-1.cdh4.3.0.p0.22/lib/hadoop-hdfs/lib/commons-lang-2.5.jar:/opt/cloudera/parcels/CDH-4.3.0-1.cdh4.3.0.p0.22/lib/hadoop-hdfs/hadoop-hdfs-2.0.0-cdh4.3.0.jar:/opt/cloudera/parcels/CDH-4.3.0-1.cdh4.3.0.p0.22/lib/hadoop-hdfs/hadoop-hdfs-2.0.0-cdh4.3.0-tests.jar:/opt/cloudera/parcels/CDH-4.3.0-1.cdh4.3.0.p0.22/lib/hadoop-hdfs/hadoop-hdfs.jar:/opt/cloudera/parcels/CDH-4.3.0-1.cdh4.3.0.p0.22/lib/hadoop/lib/xmlenc-0.52.jar:/opt/cloudera/parcels/CDH-4.3.0-1.cdh4.3.0.p0.22/lib/hadoop/lib/commons-digester-1.8.jar:/opt/cloudera/parcels/CDH-4.3.0-1.cdh4.3.0.p0.22/lib/hadoop/lib/zookeeper-3.4.5-cdh4.3.0.jar:/opt/cloudera/parcels/CDH-4.3.0-1.cdh4.3.0.p0.22/lib/hadoop/lib/commons-configuration-1.6.jar:/opt/cloudera/parcels/CDH-4.3.0-1.cdh4.3.0.p0.22/lib/hadoop/lib/junit-4.8.2.jar:/opt/cloudera/parcels/CDH-4.3.0-1.cdh4.3.0.p0.22/lib/hadoop/lib/commons-math-2.1.jar:/opt/cloudera/parcels/CDH-4.3.0-1.cdh4.3.0.p0.22/lib/hadoop/lib/commons-cli-1.2.jar:/opt/cloudera/parcels/CDH-4.3.0-1.cdh4.3.0.p0.22/lib/hadoop/lib/commons-compress-1.4.1.jar:/opt/cloudera/parcels/CDH-4.3.0-1.cdh4.3.0.p0.22/lib/hadoop/lib/jaxb-impl-2.2.3-1.jar:/opt/cloudera/parcels/CDH-4.3.0-1.cdh4.3.0.p0.22/lib/hadoop/lib/slf4j-api-1.6.1.jar:/opt/cloudera/parcels/CDH-4.3.0-1.cdh4.3.0.p0.22/lib/hadoop/lib/jackson-mapper-asl-1.8.8.jar:/opt/cloudera/parcels/CDH-4.3.0-1.cdh4.3.0.p0.22/lib/hadoop/lib/jackson-core-asl-1.8.8.jar:/opt/cloudera/parcels/CDH-4.3.0-1.cdh4.3.0.p0.22/lib/hadoop/lib/jline-0.9.94.jar:/opt/cloudera/parcels/CDH-4.3.0-1.cdh4.3.0.p0.22/lib/hadoop/lib/jackson-jaxrs-1.8.8.jar:/opt/cloudera/parcels/CDH-4.3.0-1.cdh4.3.0.p0.22/lib/hadoop/lib/servlet-api-2.5.jar:/opt/cloudera/parcels/CDH-4.3.0-1.cdh4.3.0.p0.22/lib/hadoop/lib/jersey-server-1.8.jar:/opt/cloudera/parcels/CDH-4.3.0-1.cdh4.3.0.p0.22/lib/hadoop/lib/commons-httpclient-3.1.jar:/opt/cloudera/parcels/CDH-4.3.0-1.cdh4.3.0.p0.22/lib/hadoop/lib/mockito-all-1.8.5.jar:/opt/cloudera/parcels/CDH-4.3.0-1.cdh4.3.0.p0.22/lib/hadoop/lib/jackson-xc-1.8.8.jar:/opt/cloudera/parcels/CDH-4.3.0-1.cdh4.3.0.p0.22/lib/hadoop/lib/protobuf-java-2.4.0a.jar:/opt/cloudera/parcels/CDH-4.3.0-1.cdh4.3.0.p0.22/lib/hadoop/lib/commons-codec-1.4.jar:/opt/cloudera/parcels/CDH-4.3.0-1.cdh4.3.0.p0.22/lib/hadoop/lib/jets3t-0.6.1.jar:/opt/cloudera/parcels/CDH-4.3.0-1.cdh4.3.0.p0.22/lib/hadoop/lib/log4j-1.2.17.jar:/opt/cloudera/parcels/CDH-4.3.0-1.cdh4.3.0.p0.22/lib/hadoop/lib/commons-net-3.1.jar:/opt/cloudera/parcels/CDH-4.3.0-1.cdh4.3.0.p0.22/lib/hadoop/lib/jettison-1.1.jar:/opt/cloudera/parcels/CDH-4.3.0-1.cdh4.3.0.p0.22/lib/hadoop/lib/jetty-util-6.1.26.cloudera.2.jar:/opt/cloudera/parcels/CDH-4.3.0-1.cdh4.3.0.p0.22/lib/hadoop/lib/jsch-0.1.42.jar:/opt/cloudera/parcels/CDH-4.3.0-1.cdh4.3.0.p0.22/lib/hadoop/lib/commons-beanutils-1.7.0.jar:/opt/cloudera/parcels/CDH-4.3.0-1.cdh4.3.0.p0.22/lib/hadoop/lib/avro-1.7.4.jar:/opt/cloudera/parcels/CDH-4.3.0-1.cdh4.3.0.p0.22/lib/hadoop/lib/jsp-api-2.1.jar:/opt/cloudera/parcels/CDH-4.3.0-1.cdh4.3.0.p0.22/lib/hadoop/lib/asm-3.2.jar:/opt/cloudera/parcels/CDH-4.3.0-1.cdh4.3.0.p0.22/lib/hadoop/lib/commons-collections-3.2.1.jar:/opt/cloudera/parcels/CDH-4.3.0-1.cdh4.3.0.p0.22/lib/hadoop/lib/commons-beanutils-core-1.8.0.jar:/opt/cloudera/parcels/CDH-4.3.0-1.cdh4.3.0.p0.22/lib/hadoop/lib/paranamer-2.3.jar:/opt/cloudera/parcels/CDH-4.3.0-1.cdh4.3.0.p0.22/lib/hadoop/lib/snappy-java-1.0.4.1.jar:/opt/cloudera/parcels/CDH-4.3.0-1.cdh4.3.0.p0.22/lib/hadoop/lib/commons-el-1.0.jar:/opt/cloudera/parcels/CDH-4.3.0-1.cdh4.3.0.p0.22/lib/hadoop/lib/jts-1.13.jar:/opt/cloudera/parcels/CDH-4.3.0-1.cdh4.3.0.p0.22/lib/hadoop/lib/kfs-0.3.jar:/opt/cloudera/parcels/CDH-4.3.0-1.cdh4.3.0.p0.22/lib/hadoop/lib/commons-logging-1.1.1.jar:/opt/cloudera/parcels/CDH-4.3.0-1.cdh4.3.0.p0.22/lib/hadoop/lib/hue-plugins-2.3.0-cdh4.3.0.jar:/opt/cloudera/parcels/CDH-4.3.0-1.cdh4.3.0.p0.22/lib/hadoop/lib/jetty-6.1.26.cloudera.2.jar:/opt/cloudera/parcels/CDH-4.3.0-1.cdh4.3.0.p0.22/lib/hadoop/lib/jasper-compiler-5.5.23.jar:/opt/cloudera/parcels/CDH-4.3.0-1.cdh4.3.0.p0.22/lib/hadoop/lib/jsr305-1.3.9.jar:/opt/cloudera/parcels/CDH-4.3.0-1.cdh4.3.0.p0.22/lib/hadoop/lib/jersey-core-1.8.jar:/opt/cloudera/parcels/CDH-4.3.0-1.cdh4.3.0.p0.22/lib/hadoop/lib/jersey-json-1.8.jar:/opt/cloudera/parcels/CDH-4.3.0-1.cdh4.3.0.p0.22/lib/hadoop/lib/xz-1.0.jar:/opt/cloudera/parcels/CDH-4.3.0-1.cdh4.3.0.p0.22/lib/hadoop/lib/slf4j-log4j12-1.6.1.jar:/opt/cloudera/parcels/CDH-4.3.0-1.cdh4.3.0.p0.22/lib/hadoop/lib/stax-api-1.0.1.jar:/opt/cloudera/parcels/CDH-4.3.0-1.cdh4.3.0.p0.22/lib/hadoop/lib/jasper-runtime-5.5.23.jar:/opt/cloudera/parcels/CDH-4.3.0-1.cdh4.3.0.p0.22/lib/hadoop/lib/jaxb-api-2.2.2.jar:/opt/cloudera/parcels/CDH-4.3.0-1.cdh4.3.0.p0.22/lib/hadoop/lib/guava-11.0.2.jar:/opt/cloudera/parcels/CDH-4.3.0-1.cdh4.3.0.p0.22/lib/hadoop/lib/commons-io-2.1.jar:/opt/cloudera/parcels/CDH-4.3.0-1.cdh4.3.0.p0.22/lib/hadoop/lib/activation-1.1.jar:/opt/cloudera/parcels/CDH-4.3.0-1.cdh4.3.0.p0.22/lib/hadoop/lib/commons-lang-2.5.jar:/opt/cloudera/parcels/CDH-4.3.0-1.cdh4.3.0.p0.22/lib/hadoop/hadoop-auth-2.0.0-cdh4.3.0.jar:/opt/cloudera/parcels/CDH-4.3.0-1.cdh4.3.0.p0.22/lib/hadoop/hadoop-common-2.0.0-cdh4.3.0-tests.jar:/opt/cloudera/parcels/CDH-4.3.0-1.cdh4.3.0.p0.22/lib/hadoop/hadoop-auth.jar:/opt/cloudera/parcels/CDH-4.3.0-1.cdh4.3.0.p0.22/lib/hadoop/hadoop-annotations.jar:/opt/cloudera/parcels/CDH-4.3.0-1.cdh4.3.0.p0.22/lib/hadoop/hadoop-common.jar:/opt/cloudera/parcels/CDH-4.3.0-1.cdh4.3.0.p0.22/lib/hadoop/hadoop-common-2.0.0-cdh4.3.0.jar:/opt/cloudera/parcels/CDH-4.3.0-1.cdh4.3.0.p0.22/lib/hadoop/hadoop-annotations-2.0.0-cdh4.3.0.jar:/mnt/disk_f/mapred/local/taskTracker/crap/jobcache/job_201405090940_10331/jars/classes:/mnt/disk_f/mapred/local/taskTracker/crap/jobcache/job_201405090940_10331/jars/job.jar:/mnt/disk_c/mapred/local/taskTracker/crap/distcache/-1013983873371450022_1404893582_692900056/c1n8.gbif.org/user/crap/.staging/job_201405090940_10331/libjars/occurrence-cli.jar:/mnt/disk_j/mapred/local/taskTracker/crap/jobcache/job_201405090940_10331/attempt_201405090940_10331_m_000160_0/work
2014-05-23 15:37:37,953 INFO org.apache.zookeeper.ZooKeeper: Client environment:java.library.path=/opt/cloudera/parcels/CDH-4.3.0-1.cdh4.3.0.p0.22/lib/hadoop-0.20-mapreduce/lib/native/Linux-amd64-64:/mnt/disk_j/mapred/local/taskTracker/crap/jobcache/job_201405090940_10331/attempt_201405090940_10331_m_000160_0/work
2014-05-23 15:37:37,953 INFO org.apache.zookeeper.ZooKeeper: Client environment:java.io.tmpdir=/mnt/disk_j/mapred/local/taskTracker/crap/jobcache/job_201405090940_10331/attempt_201405090940_10331_m_000160_0/work/tmp
2014-05-23 15:37:37,953 INFO org.apache.zookeeper.ZooKeeper: Client environment:java.compiler=
2014-05-23 15:37:37,953 INFO org.apache.zookeeper.ZooKeeper: Client environment:os.name=Linux
2014-05-23 15:37:37,953 INFO org.apache.zookeeper.ZooKeeper: Client environment:os.arch=amd64
2014-05-23 15:37:37,953 INFO org.apache.zookeeper.ZooKeeper: Client environment:os.version=2.6.32-358.6.1.el6.x86_64
2014-05-23 15:37:37,953 INFO org.apache.zookeeper.ZooKeeper: Client environment:user.name=mapred
2014-05-23 15:37:37,953 INFO org.apache.zookeeper.ZooKeeper: Client environment:user.home=/var/lib/hadoop-mapreduce
2014-05-23 15:37:37,953 INFO org.apache.zookeeper.ZooKeeper: Client environment:user.dir=/mnt/disk_j/mapred/local/taskTracker/crap/jobcache/job_201405090940_10331/attempt_201405090940_10331_m_000160_0/work
2014-05-23 15:37:37,954 INFO org.apache.zookeeper.ZooKeeper: Initiating client connection, connectString=c1n9.gbif.org:2181,c1n10.gbif.org:2181,c1n8.gbif.org:2181 sessionTimeout=180000 watcher=hconnection
2014-05-23 15:37:37,994 INFO org.apache.hadoop.hbase.zookeeper.RecoverableZooKeeper: The identifier of this process is 5077@c4n1.gbif.org
2014-05-23 15:37:38,002 INFO org.apache.zookeeper.ClientCnxn: Opening socket connection to server c1n10.gbif.org/130.226.238.180:2181. Will not attempt to authenticate using SASL (unknown error)
2014-05-23 15:37:38,003 INFO org.apache.zookeeper.ClientCnxn: Socket connection established to c1n10.gbif.org/130.226.238.180:2181, initiating session
2014-05-23 15:37:38,021 INFO org.apache.zookeeper.ClientCnxn: Session establishment complete on server c1n10.gbif.org/130.226.238.180:2181, sessionid = 0x245476b24d2c6df, negotiated timeout = 60000
2014-05-23 15:37:38,267 WARN org.apache.hadoop.conf.Configuration: hadoop.native.lib is deprecated. Instead, use io.native.lib.available
2014-05-23 15:37:38,568 INFO org.apache.hadoop.mapred.MapTask: Processing split: c4n1.gbif.org:0=\xD2 ,0hHB
2014-05-23 15:37:53,429 INFO org.apache.hadoop.mapred.TaskLogsTruncater: Initializing logs' truncater with mapRetainSize=-1 and reduceRetainSize=-1
2014-05-23 15:37:53,432 WARN org.apache.hadoop.mapred.Child: Error running child
java.lang.NullPointerException
	at java.util.UUID.fromString(UUID.java:192)
	at org.gbif.occurrence.cli.registry.sync.OccurrenceScanMapper.map(OccurrenceScanMapper.java:85)
	at org.gbif.occurrence.cli.registry.sync.OccurrenceScanMapper.map(OccurrenceScanMapper.java:51)
	at org.apache.hadoop.mapreduce.Mapper.run(Mapper.java:140)
	at org.apache.hadoop.mapred.MapTask.runNewMapper(MapTask.java:672)
	at org.apache.hadoop.mapred.MapTask.run(MapTask.java:330)
	at org.apache.hadoop.mapred.Child$4.run(Child.java:268)
	at java.security.AccessController.doPrivileged(Native Method)
	at javax.security.auth.Subject.doAs(Subject.java:415)
	at org.apache.hadoop.security.UserGroupInformation.doAs(UserGroupInformation.java:1408)
	at org.apache.hadoop.mapred.Child.main(Child.java:262)
2014-05-23 15:37:53,435 INFO org.apache.hadoop.mapred.Task: Runnning cleanup for the task]]>


Author: omeyn@gbif.org
Comment: Needs to be reproduced on modern (ie cdh5) code, and if still valid then probably no longer "tiny".
Created: 2015-03-02 15:40:32.648
Updated: 2015-03-02 15:40:32.648