EBI - 'uncultured' species names

16417
Reporter: jlegind
Assignee: mdoering
Type: Improvement
Summary: EBI - 'uncultured' species names
Priority: Major
Resolution: Fixed
Status: Resolved
Created: 2014-09-18 16:28:16.937
Updated: 2015-10-11 17:09:13.232
Resolved: 2015-10-11 17:09:13.103
        
Description: Newest INSDC dataset has 853,537 scientific names with ‘uncultured’ prefixed out of a total of 5,802,832 records. 391,530 are ‘uncultured bacterium’.

Sample:
uncultured Verrucomicrobia bacterium
uncultured Verrucomicrobia subdivision 5 bacterium
uncultured Verrucomicrobiaceae bacterium
uncultured Verrucomicrobiae bacterium
uncultured Verrucomicrobiales bacterium
uncultured Verrucomicrobium sp.
uncultured Verrucosispora sp.
uncultured Verticillium
uncultured Vibrio sp.
uncultured Vibrionaceae bacterium
uncultured Victivallis sp.
uncultured Virgibacillus sp.
uncultured Virgisporangium sp.
uncultured virus
uncultured Vogesella sp.
uncultured Weissella sp.
uncultured Wilcoxina
uncultured Wolinella sp.
uncultured Xanthobacter sp.
uncultured Xanthomonadaceae bacterium
uncultured Xanthomonadales bacterium
uncultured Xanthomonas sp.
uncultured Xenococcus sp.
uncultured Xenophilus sp.
uncultured Xerocomus
uncultured Xiphinematobacteriaceae bacterium
uncultured Yaniella sp.
uncultured Yonghaparkia sp.
uncultured Zalerion
uncultured zygomycete
]]>
    

Author: mdoering@gbif.org
Comment: was mostly working already. Fixed in https://github.com/gbif/name-parser/commit/66d03912d0d1a2395c742dd667d50331d895a5d6
Created: 2015-10-11 17:09:13.229
Updated: 2015-10-11 17:09:13.229