Flag backbone usages that should be a recombination
17756
Reporter: mdoering
Assignee: mdoering
Type: NewFeature
Summary: Flag backbone usages that should be a recombination
Priority: Major
Resolution: Fixed
Status: Resolved
Created: 2015-08-10 11:24:24.948
Updated: 2016-02-04 12:58:32.809
Resolved: 2015-10-12 12:07:12.948
Description: See Rods gist: http://gist.neo4j.org/?dae6d15551eda2d7ca12
Because you can only move a species to a genus that has been named, it follows that if a species is described before the genus name was published, then if the species is in that newer genus the authorship must be in parentheses. For example, the lepidopteran genus Heliopyrgus was published in 1957, and includes the species willi Plötz, 1884. Since this species was described before 1957, it must have been originally placed in a different genus, and so the species name should be Heliopyrgus willi (Plötz, 1884). However, GBIF has this as Heliopyrgus willi Plötz, 1884 (no parentheses).
Add some post build checks to the nub generator that flags those usages and adds a new NameUsageIssue.DOUBTFUL_ORIGINAL_NAME]]>
Author: mdoering@gbif.org
Created: 2015-09-18 20:39:30.406
Updated: 2015-09-18 20:39:30.406
Good example:
http://www.gbif.org/species/search?q=Heliopyrgus+domicella
as recombination in ION: http://www.organismnames.com/details.htm?lsid=1515439
Author: mdoering@gbif.org
Created: 2016-02-02 20:40:03.967
Updated: 2016-02-02 20:40:03.967
[~rdmpage] the latest new backbone flags 5110 names being published earlier than their genus:
http://www.gbif-uat.org/species/search?dataset_key=d7dddbf4-2cf0-4f39-9b2a-bb099caae36c&issue=PUBLISHED_BEFORE_GENUS
Thanks for the idea!
Author: rdmpage
Comment: [~mdoering@gbif.org] You're welcome! Any plans to display taxon issues in species pages (in the same way that occurrences have issue flags displayed). Would single to user that GBIF "knows" that there is a problem.
Created: 2016-02-03 11:44:17.468
Updated: 2016-02-03 11:44:17.468
Author: mdoering@gbif.org
Created: 2016-02-04 12:58:32.809
Updated: 2016-02-04 12:58:32.809
Good idea Rod, no idea why we did not show those before.
I've added them to the bottom of the species page for now:
https://github.com/gbif/portal-web/commit/45841e702c4e3a1f66c4b8fa08782dca0fb7aac0