Handle non Linnean inter rank homonyms in nub lookup

10634
Reporter: mdoering
Assignee: mdoering
Type: NewFeature
Summary: Handle non Linnean inter rank homonyms in nub lookup
Priority: Critical
Status: Reopened
Created: 2012-01-16 12:39:56.178
Updated: 2016-04-14 11:23:29.834
        
Description: We are constantly encountering new, mainly inter rank homonyms which are not covered by IRMNG (which mostly focusses on the thousands of genus homonyms).
In order to deal with feedback in time we need a custom list of homonyms that we can manage ourselves.

For example the Radiolaria reported by Paco:
http://ecat-dev.gbif.org/usage/4298634]]>
    

Author: mdoering@gbif.org
Created: 2012-01-16 12:44:17.513
Updated: 2012-01-16 12:44:17.513
        
mostly Radiolaria is considered a subphylum:
http://ecat-dev.gbif.org/usage/109592134

But some occurrence records report it without a rank or classification:
http://data.gbif.org/occurrences/366298749/

So the trouble is even harder, as subphyla are not included in the nub and we therefore don't treat them as homonyms.
Maybe the homonym informer needs to know about any ranks, not only linnean?
    

Author: mdoering@gbif.org
Created: 2012-01-26 16:01:24.706
Updated: 2012-01-26 16:01:24.706
        
Reusing the ECAT provisional names list for homonyms:
http://code.google.com/p/gbif-ecat/source/browse/trunk/ecat-checklists/provisional_new_names.txt
    

Author: trobertson@gbif.org
Comment: Insecta map shows is not fixed.  Reopening and pointing Paco Pando at this issue
Created: 2012-04-26 10:15:45.69
Updated: 2012-04-26 10:15:45.69

Author: mdoering@gbif.org
Created: 2012-04-27 22:48:27.867
Updated: 2012-04-27 22:48:27.867
        
The problem has resurfaced since we generate the higher taxonomy based on CoL alone again. Before we included names found in the provisional_new_names.txt, but now they are excluded.

WoRMS knows about the subphylum Radiolaria: http://ecat-dev.gbif.org/usage/109592134

Option 1) would be to include many more of such non linen rank names as "inter rank homonyms" and point them to the next higher, accepted linen rank taxon. That way the nub is aware of those homonyms and can disambiguate them if enough information is at hand or the nub lookup would return null if it can't. Those artificial "inter rank synonyms" need to be displayed carefully in web services and the portal - maybe even excluded altogether. The status exists already as we used this "hack" in older nubs already. Downside here is that we need to somehow filter the inter rank homonyms.

Option 2) is to only update the nub lookup and do a second check against all checklists when a name matches only as a monomial, not a bi or even trinomial. If we get a single hit with a monomial against the nub we can consult CLB for other usages of different ranks for the same name. This seems a good idea at first glance, but might be error prone when we get more and more checklists with lots of varying quality and treatments of the same name. Lots of higher taxa are considered to be different ranks across checklists.

Option 3) include the inter rank homonyms in the homonym informer - this actually *should* already be the case. Need to investigate why this is failing right now...
    

Author: mdoering@gbif.org
Created: 2012-04-27 22:49:28.08
Updated: 2012-04-27 22:49:28.08
        
A nub look up for Radiolaria without any further hint returns the insect synonym genus as of April 2012:
http://cache.gbif.org/ws-nub/nub?name=Radiolaria
    

Author: mdoering@gbif.org
Created: 2012-05-23 15:41:22.228
Updated: 2012-05-23 15:50:01.915
        
To give an idea on the data available to solve the Radiolaria problem, here are all current CLB usages that have Radiolaria as their canonical name:

{noformat}

   id     |checklist|       scientific_name       |   rank    | synonym/status|  kingdom  |   phylum   |     class     |    order    |   family   |   genus
----------+---------+-----------------------------+-----------+---------------+-----------+------------+---------------+-------------+------------+-----------
  4298634 |       1 | Radiolaria Provancher, 1886 | genus     | t  synonym    | Animalia  | Arthropoda | Insecta       | Hymenoptera | Braconidae | Dacnusa
113452125 |       4 | Radiolaria Provancher, 1886 | genus     | t  synonym    | Animalia  | Arthropoda | Insecta       | Hymenoptera |            | Dacnusa
107209491 |    1012 | Radiolaria Provancher, 1886 | genus     | t  invalid    | Animalia  | Arthropoda | Insecta       | Hymenoptera | Braconidae | Dacnusa
107209490 |    1012 | Radiolaria Provancher, 1886 | genus     | t  invalid    | Animalia  | Arthropoda | Insecta       | Hymenoptera | Braconidae | Dacnusa
102866243 |    1037 | Radiolaria                  | genus     | f             |           |            |               |             |            | Radiolaria
102320823 |    1037 | Radiolaria Provancher, 1886 | genus     | f             | Animalia  | Arthropoda | Insecta       | Hymenoptera | Braconidae | Radiolaria
107907271 |    1003 | Radiolaria J. Müller, 1858  | order     | f             | Animalia  | Protozoa   | Sarcodina     | Radiolaria  |            |
107301032 |    1012 | Radiolaria                  | order     | t  invalid    | Protozoa  | Protozoa   | Labyrinthulea | Radiolaria  |            |
107301031 |    1012 | Radiolaria                  | order     | f  valid      | Protozoa  | Protozoa   | Labyrinthulea | Radiolaria  |            |
107730308 |    1013 | Radiolaria                  | class     | f             |           | Actinopoda | Radiolaria    |             |            |
113452126 |       4 | Radiolaria                  | subphylum | f  accepted   | Protozoa  |            |               |             |            |
109592134 |    1007 | Radiolaria Muller, 1858     | subphylum | t  unaccepted | Chromista | Radiozoa   |               |             |            |
106910450 |    1010 | Radiolaria                  |           | t             |           |            |               |             |            |
110509263 |    1050 | Radiolaria                  |           | f             |           |            |               |             |            |
110406200 |    1051 | Radiolaria (Müller, 1858)   |           | f             |           |            |               |             |            |
{noformat}
    

Author: mdoering@gbif.org
Created: 2012-05-23 16:16:56.754
Updated: 2012-05-23 16:17:44.132
        
more investigations into actual CLB data showing some other inter rank homonyms:

Many subgeneric variants for the same name:
{noformat}
 scientific_name    | count | distinct ranks
 Abies Amabiles     |     4 | section,series,subsection,subseries
 Abies Balsamea     |     6 | section,series,subgenus,subsection,subseries
 Abies Bracteatae   |     3 | series,subsection,subseries
 Abies Cephalonicae |     4 | section,series,subsection,subseries
 Abies Cilicicae    |     3 | series,subsection,subseries
 Abies Concolores   |     3 | series,subsection,subseries
 Abies Faxonianae   |     3 | series,subsection,subseries
 Abies Firmae       |     4 | series,subsection,subseries
 Abies Grandes      |     4 | section,series,subsection,subseries
 Abies Homolepides  |     6 | section,series,subsection,subseries
{noformat}

10 higher potential inter rank homonyms, but not all have non linnean ranks that are causing the trouble:
{noformat}
 scientific_name | count | distinct ranks
 Acarina         |     5 | genus,order,subclass
 Acoela          |    11 | class,order,phylum,subphylum
 Acrania         |     6 | genus,phylum,subphylum
 Aculeata        |     8 | family,genus,infraorder,suborder
 Amphisbaenia    |     6 | family,infraorder,order,suborder,supragenericname
 Anomalodesmacea |     4 | order,subclass,superfamily
 Anoplura        |    11 | genus,order,suborder
 Archaea         |    12 | domain,genus,kingdom
 Articulata      |    14 | class,order,subclass,suborder
 Ascophora       |    21 | genus,infraorder,suborder
{noformat}
    

Author: mdoering@gbif.org
Created: 2012-05-23 16:46:03.703
Updated: 2012-05-23 16:46:03.703
        
This is the full list of all 128 canonical names in CLB that exist at least at 3 different suprageneric or generic ranks.

{noformat}
select cn.scientific_name, count(*), array_to_string(array_agg(distinct r.term), ',') from name_usage u join term r2 on rank_fk=r2.id join term r on r2.preferred_term_fk=r.id join name_string n on name_fk=n.id join name_string cn on n.canonical_name_fk=cn.id where r.id<426 group by cn.scientific_name  having count(distinct r.term)>2;

    scientific_name    | count |                  distinct ranks
-----------------------+-------+---------------------------------------------------
 Acarina               |     5 | genus,order,subclass
 Acoela                |    11 | class,order,phylum,subphylum
 Acrania               |     6 | genus,phylum,subphylum
 Aculeata              |     8 | family,genus,infraorder,suborder
 Amphisbaenia          |     6 | family,infraorder,order,suborder,supragenericname
 Anomalodesmacea       |     4 | order,subclass,superfamily
 Anoplura              |    11 | genus,order,suborder
 Archaea               |    12 | domain,genus,kingdom
 Articulata            |    14 | class,order,subclass,suborder
 Ascophora             |    21 | genus,infraorder,suborder
 Asthenodonta          |     5 | genus,order,suborder
 Astigmata             |     7 | order,suborder,superfamily
 Bacteria              |    20 | domain,genus,kingdom,phylum
 Bacteroidetes         |    12 | class,phylum,superphylum
 Batoidea              |     5 | order,subclass,superorder
 Bdelloidea            |    14 | class,order,subclass,superfamily
 Blattaria             |    18 | genus,order,suborder
 Branchiura            |    19 | class,genus,order,subclass
 Caenogastropoda       |     4 | order,subclass,superorder
 Calycina              |    16 | genus,order,superorder
 Camerata              |     4 | genus,order,subclass
 Candidatus            |   122 | family,genus,order
 Capitata              |     6 | family,genus,suborder
 Cassidulina           |    16 | genus,suborder,superfamily
 Catenulida            |     9 | class,order,phylum
 Chlamydiae            |    13 | class,phylum,superphylum
 Chondrophora          |    12 | family,genus,order
 Ciliophora            |    17 | genus,phylum,subphylum
 Cingulata             |    14 | genus,order,suborder
 Cladocera             |    18 | genus,order,suborder
 Clavicornia           |     5 | genus,subtribe,tribe
 Coccidia              |     6 | class,genus,order,subclass
 Cocculiniformia       |     6 | order,subclass,superorder
 Cornuta               |     7 | class,genus,order
 Coronata              |     8 | class,genus,order
 Craniata              |     9 | class,phylum,subphylum
 Crustacea             |     8 | class,subphylum,superclass
 Cryptodonta           |     6 | genus,subclass,superorder
 Dictyoptera           |    19 | genus,order,superorder
 Diplura               |    31 | class,genus,order
 Distichodontidae      |     7 | family,genus,subfamily
 Doridina              |     3 | infraorder,order,suborder
 Echiurida             |     4 | class,order,phylum
 Echiuroidea           |     3 | class,order,phylum
 Enteropneusta         |    11 | class,order,phylum
 Environmental samples |     8 | family,genus,order
 Euglenida             |     7 | class,order,phylum
 Eumycota              |     4 | kingdom,phylum,subkingdom
 Eustigmatophyceae     |     8 | class,order,phylum
 Fibrobacteres         |    11 | class,phylum,superphylum
 Filosa                |     7 | class,genus,subphylum
 Florideae             |     4 | family,order,subclass
 Foraminifera          |     5 | class,genus,order,phylum
 Fungi                 |    24 | class,kingdom,phylum,subkingdom,subphylum
 Gnathophiurina        |     7 | infraorder,order,suborder
 Heliozoa              |     8 | class,order,phylum
 Hepaticae             |     4 | class,kingdom,subphylum
 Heterodonta           |     8 | genus,order,subclass
 Heterodontoidea       |     3 | suborder,superfamily,superorder
 Heteropoda            |    17 | genus,order,suborder,superfamily
 Hexapoda              |     7 | class,subphylum,superclass
 Homoptera             |    10 | genus,order,suborder
 Hoplocarida           |     5 | phylum,subclass,superorder
 Ischnocera            |     6 | genus,infraorder,suborder
 Leptostraca           |     8 | order,subclass,superorder
 Loricariinae          |     5 | family,subfamily,subtribe
 Loricata              |     5 | class,order,suborder
 Mastigophora          |    34 | class,genus,subphylum
 Mesostigmata          |     8 | order,suborder,superfamily
 Mesozoa               |     4 | phylum,subkingdom,superphylum
 Microsporidia         |    10 | genus,order,phylum
 Monopisthocotylea     |     8 | order,subclass,superorder
 Mycetozoa             |    11 | class,order,phylum,subphylum
 Mycota                |     5 | genus,kingdom,phylum
 Myriapoda             |     6 | class,phylum,subphylum
 Nectonematoidea       |     6 | class,order,superfamily
 Nematophora           |    21 | genus,order,superorder
 Nemertodermatida      |     8 | class,order,phylum,subphylum
 Neoptera              |     7 | genus,subclass,superorder
 Nitrospira            |    17 | class,genus,phylum
 Not assigned          |   408 | class,family,genus,order,phylum
 Notodelphyoida        |     5 | genus,order,suborder
 Octopoda              |    16 | genus,order,suborder
 Oligochaeta           |    17 | class,genus,subclass
 Oniscoidea            |     6 | family,suborder,superfamily
 Onychophora           |    18 | class,genus,order,phylum
 Oribatida             |     6 | order,suborder,superfamily
 Osteichthyes          |    23 | class,order,superclass
 Parabasalia           |     8 | class,phylum,superclass
 Parasitiformes        |     5 | order,suborder,superorder
 Peritricha            |     5 | genus,order,subclass
 Phaeodaria            |     6 | class,order,subclass
 Pilosa                |    13 | genus,infraorder,order
 Pinnipedia            |     6 | family,infraorder,suborder
 Podocopa              |     5 | order,subclass,suborder
 Pogonophora           |    15 | class,genus,phylum
 Polychaeta            |    19 | class,genus,phylum
 Polycystina           |    11 | class,genus,order,superorder
 Proseriata            |     8 | class,order,suborder
 Prostigmata           |     7 | order,suborder,superfamily
 Protozoa              |    13 | kingdom,phylum,subkingdom
 Psilotopsida          |     8 | class,order,superclass
 Ptenoglossa           |     4 | infraorder,order,suborder
 Pteridophyta          |    18 | class,family,phylum
 Pulmonata             |     7 | order,subclass,superorder
 Radiolaria            |    12 | class,genus,order,subphylum
 Rhabditophora         |     5 | class,phylum,subphylum
 Rhizopoda             |     7 | phylum,subclass,superclass
 Rhombifera            |    14 | class,genus,order
 Rugosa                |     8 | genus,order,subclass
 Saccharomycetes       |    19 | class,genus,order
 Sagenista             |    10 | genus,phylum,subphylum
 Sauria                |     8 | genus,order,suborder
 Schizophora           |     5 | genus,suborder,superfamily
 Serpentes             |     8 | infraorder,order,suborder
 Sicydiinae            |     4 | genus,subfamily,subtribe
 Siluriformes          |    27 | family,genus,order
 Soluta                |     9 | genus,order,subclass
 Sporozoa              |     9 | class,phylum,subphylum
 Stenoglossa           |    19 | genus,order,suborder
 Suina                 |     3 | infraorder,suborder,tribe
 Titanoptera           |     7 | genus,order,suborder
 Tricladida            |    11 | class,order,suborder
 Unclassified          |     8 | genus,subclass,subfamily,suborder,tribe
 Vertebrata            |    10 | genus,phylum,subphylum
 Vetigastropoda        |     8 | order,subclass,superorder
 Xenarthra             |    11 | genus,order,suborder,superorder
 Xiphosura             |    11 | genus,order,subclass
{noformat}
    

Author: mdoering@gbif.org
Created: 2012-05-23 17:26:09.01
Updated: 2012-05-23 17:26:09.01
        
Some more details for some of the above names:
NOTE: checklist 1=NUB, 3=IRMNG HOMONYMS, all other can be resolved via urls like ecat-dev.gbif.org/checklist/1013

*Blattaria*
{noformat}
    id     | checklist_fk |      scientific_name       |   rank   | is_synonym |  status  | kingdom  |    phylum     |     class     |      order      |   genus   | species
-----------+--------------+----------------------------+----------+------------+----------+----------+---------------+---------------+-----------------+-----------+---------
 102361307 |         1037 | Blattaria Voet, ?, 1806    | genus    | f          |          | Animalia | Arthropoda    | Insecta       | Coleoptera      | Blattaria |
   3260789 |            1 | Blattaria Voet, ?, 1806    | genus    | f          | accepted | Animalia | Arthropoda    | Insecta       | Coleoptera      | Blattaria |
 102361247 |         1037 | Blattaria Weyenbergh, 1874 | genus    | f          |          | Animalia | Arthropoda    | Insecta       | Orthoptera      | Blattaria |
 100489432 |            3 | Blattaria Weyenbergh, 1874 | genus    | f          |          | Animalia | Arthropoda    | Insecta       | Orthoptera      | Blattaria |
   3259759 |            1 | Blattaria Weyenbergh, 1874 | genus    | f          | accepted | Animalia | Arthropoda    | Insecta       | Orthoptera      | Blattaria |
 100489445 |            3 | Blattaria Voet, ?, 1806    | genus    | f          |          | Animalia | Arthropoda    | Insecta       | Coleoptera      | Blattaria |
 100489446 |            3 | Blattaria O. Kuntze, 1891  | genus    | f          |          | Plantae  | Magnoliophyta | Magnoliopsida | Malvales        | Blattaria |
 102361309 |         1037 | Blattaria P. Miller, 1754  | genus    | f          |          | Plantae  | Magnoliophyta | Magnoliopsida | Lamiales        | Blattaria |
 100489447 |            3 | Blattaria P. Miller, 1754  | genus    | f          |          | Plantae  | Magnoliophyta | Magnoliopsida | Lamiales        | Blattaria |
   3233430 |            1 | Blattaria P. Miller, 1754  | genus    | f          | accepted | Plantae  | Magnoliophyta | Magnoliopsida | Scrophulariales | Blattaria |
   3234036 |            1 | Blattaria O. Kuntze, 1891  | genus    | f          | accepted | Plantae  | Magnoliophyta | Magnoliopsida | Malvales        | Blattaria |
 102361308 |         1037 | Blattaria O. Kuntze, 1891  | genus    | f          |          | Plantae  | Magnoliophyta | Magnoliopsida | Malvales        | Blattaria |
 102607183 |         1037 | Blattaria                  | genus    | f          |          |          |               |               |                 | Blattaria |
 110855954 |         1056 | Blattaria                  | order    | f          |          | Animalia | Arthropoda    | Insecta       | Blattaria       |           |
 107654026 |         1013 | Blattaria                  | order    | f          |          | Metazoa  | Arthropoda    | Insecta       | Blattaria       |           |
 107153443 |         1012 | Blattaria                  | suborder | f          | valid    | Animalia | Arthropoda    | Insecta       | Dictyoptera     |           |
{noformat}



*Coccidia*
{noformat}
    id     | checklist_fk |      scientific_name       |   rank   | is_synonym |    status     |  kingdom  |   phylum    |      class      |       order       |    genus     | species
-----------+--------------+----------------------------+----------+------------+---------------+-----------+-------------+-----------------+-------------------+--------------+---------
 106387612 |         1010 | Coccidia                   | class    | f          |               |           | Apicomplexa | Coccidia        |                   |              |
 113786198 |         1007 | Coccidiasina               | subclass | f          | accepted      | Chromista | Myzozoa     | Conoidasida     |                   |              |
 107301102 |         1012 | Coccidia                   | subclass | f          | valid         | Protozoa  | Protozoa    | Sporozoa        |                   |              |
 107907337 |         1003 | Coccidia Leuckart, 1879    | order    | f          |               | Animalia  | Protozoa    | Sporozoa        | Coccidia          |              |
 105018711 |           10 | Coccidiascus               | genus    | f          | accepted name | Fungi     | Ascomycota  | Saccharomycetes | Saccharomycetales | Coccidiascus |
 100761550 |         1037 | Coccidiascus Chatton, 1913 | genus    | f          | accepted      | Fungi     | Ascomycota  | Saccharomycetes | Saccharomycetales | Coccidiascus |
   2599644 |            1 | Coccidiascus Chatton       | genus    | f          | accepted      | Fungi     | Ascomycota  | Saccharomycetes | Saccharomycetales | Coccidiascus |
 102372903 |         1037 | Coccidia                   | genus    | f          |               | Protista  | Apicomplexa | Sporozoa        | Neogregarinida    | Coccidia     |
   4895097 |            1 | Coccidia                   | genus    | f          | accepted      | Protozoa  |             | Sporozoa        |                   | Coccidia     |
 102638080 |         1037 | Coccidia                   | genus    | f          |               |           |             |                 |                   | Coccidia     |
 102638081 |         1037 | Coccidiascus               | genus    | f          |               |           |             |                 |                   | Coccidiascus |
{noformat}




*Cornuta*
{noformat}
    id     | checklist_fk |       scientific_name       | rank  | is_synonym |    status     | kingdom  |      phylum       |     class     |   order    |      genus      | species
-----------+--------------+-----------------------------+-------+------------+---------------+----------+-------------------+---------------+------------+-----------------+---------
 100480919 |            3 | Cornuta                     | class | f          |               | Animalia | Echinodermata     | Cornuta       |            |                 |
 102249254 |         1037 | Cornuta                     | class | f          |               | Animalia | Echinodermata     | Cornuta       |            |                 |
 102253172 |         1037 | Cornuta                     | order | f          |               | Animalia | Echinodermata     | Stylophora    | Cornuta    |                 |
 100481152 |            3 | Cornuta                     | order | f          |               | Animalia | Echinodermata     | Stylophora    | Cornuta    |                 |
 107665071 |         1013 | Cornuta                     | order | f          |               | Metazoa  | Echinodermata     | Stylophora    | Cornuta    |                 |
   2023897 |            1 | Cornutalis Sakakibara, 1998 | genus | f          | accepted      | Animalia | Arthropoda        | Insecta       | Hemiptera  | Cornutalis      |
 102252501 |         1037 | Cornutalis Sakakibara, 1998 | genus | f          |               | Animalia | Arthropoda        | Insecta       | Hemiptera  | Cornutalis      |
   1142792 |            1 | Cornutaemospila Pic, 1927   | genus | f          | accepted      | Animalia | Arthropoda        | Insecta       | Coleoptera | Cornutaemospila |
 105014338 |           10 | Cornutalis                  | genus | f          | accepted name | Animalia | Arthropoda        | Insecta       | Hemiptera  | Cornutalis      |
 101969302 |         1037 | Cornutaemospila Pic, 1927   | genus | f          |               | Animalia | Arthropoda        | Insecta       | Coleoptera | Cornutaemospila |
   6172438 |            1 | Cornuta L.                  | genus | f          | accepted      | Plantae  | Magnoliophyta     | Magnoliopsida | Lamiales   | Cornuta         |
 102238431 |         1037 | Cornutanna Haeckel, 1881    | genus | f          |               | Protista | Sarcomastigophora | Polycystina   |            | Cornutanna      |
   4889483 |            1 | Cornutanna Haeckel, 1881    | genus | f          | accepted      | Protozoa | Sarcomastigophora | Polycystina   |            | Cornutanna      |
 102643911 |         1037 | Cornutaemospila             | genus | f          |               |          |                   |               |            | Cornutaemospila |
 102643913 |         1037 | Cornutanna                  | genus | f          |               |          |                   |               |            | Cornutanna      |
 102643912 |         1037 | Cornutalis                  | genus | f          |               |          |                   |               |            | Cornutalis      |

{noformat}



*Filosa*
{noformat}
    id     | checklist_fk |    scientific_name    |   rank    | is_synonym |  status  |  kingdom  |      phylum       |   class    |         order         | genus  | species
-----------+--------------+-----------------------+-----------+------------+----------+-----------+-------------------+------------+-----------------------+--------+---------
 109533892 |         1007 | Filosa                | subphylum | f          | accepted | Chromista | Cercozoa          |            |                       |        |
 102545026 |         1037 | Filosa                | class     | f          |          | Protista  | Sarcomastigophora | Filosa     |                       |        |
 100533095 |            3 | Filosa                | class     | f          |          | Protista  | Sarcomastigophora | Filosa     |                       |        |
 109542145 |         1007 | Filosa incertae sedis | order     | f          | accepted | Chromista | Cercozoa          |            | Filosa incertae sedis |        |
   5429437 |            1 | Filosa Böttger, 1877  | genus     | f          | accepted | Animalia  | Mollusca          | Gastropoda | Stylommatophora       | Filosa |
 100472313 |            3 | Filosa Böttger, 1877  | genus     | f          | valid    | Animalia  | Mollusca          | Gastropoda | Stylommatophora       | Filosa |
 100975156 |         1037 | Filosa Böttger, 1877  | genus     | f          | valid    | Animalia  | Mollusca          | Gastropoda | Stylommatophora       | Filosa |
 102692725 |         1037 | Filosa                | genus     | f          |          |           |                   |            |                       | Filosa |
{noformat}



*Enteropneusta*
{noformat}
    id     | checklist_fk |        scientific_name        |  rank  | is_synonym |    status     | kingdom  |    phylum     |     class     |     order     | genus | species
-----------+--------------+-------------------------------+--------+------------+---------------+----------+---------------+---------------+---------------+-------+---------
 107907128 |         1003 | Enteropneusta Gegenbaur, 1870 | phylum | f          |               | Animalia | Enteropneusta |               |               |       |
 114323830 |           10 | Enteropneusta                 | class  | f          | accepted name | Animalia | Hemichordata  | Enteropneusta |               |       |
       277 |            1 | Enteropneusta Gegenbaur, 1870 | class  | f          | accepted      | Animalia | Hemichordata  | Enteropneusta |               |       |
 107215858 |         1012 | Enteropneusta                 | class  | f          | valid         | Animalia | Hemichordata  | Enteropneusta |               |       |
 102255623 |         1037 | Enteropneusta                 | class  | f          |               | Animalia | Hemichordata  | Enteropneusta |               |       |
 111473300 |            3 | Enteropneusta                 | class  | f          |               | Animalia | Hemichordata  | Enteropneusta |               |       |
 109583762 |         1007 | Enteropneusta Gegenbaur, 1870 | class  | f          | accepted      | Animalia | Hemichordata  | Enteropneusta |               |       |
 113588961 |         1087 | Enteropneusta                 | class  | f          |               | Animalia | Hemichordata  | Enteropneusta |               |       |
 107675462 |         1013 | Enteropneusta                 | class  | f          |               | Metazoa  | Hemichordata  | Enteropneusta |               |       |
 105920367 |         1010 | Enteropneusta                 | class  | f          |               | Metazoa  | Hemichordata  | Enteropneusta |               |       |
 109580707 |         1007 | Enteropneusta                 | order  | f          | accepted      | Animalia | Hemichordata  | Enteropneusta | Enteropneusta |       |
 109613497 |         1007 | Enteropneusta incertae sedis  | family | f          | accepted      | Animalia | Hemichordata  | Enteropneusta | |       |

{noformat}




*Heteropoda*
{noformat}
    id     | checklist_fk |            scientific_name             |    rank     | is_synonym |    status     | kingdom  |   phylum   |   class    |      order      |      genus      | species
-----------+--------------+----------------------------------------+-------------+------------+---------------+----------+------------+------------+-----------------+-----------------+---------
 110869364 |         1056 | Heteropoda                             | order       | f          |               | Animalia | Mollusca   | Gastropoda | Heteropoda      |                 |
 107686719 |         1013 | Heteropoda                             | suborder    | f          |               | Metazoa  | Mollusca   | Gastropoda | Neotaenioglossa |                 |
 107286656 |         1012 | Heteropoda Lamarck, 1801               | superfamily | t          | invalid       | Animalia | Mollusca   | Gastropoda | Neotaenioglossa |                 |
 109553051 |         1007 | Heteropoda Lamarck, 1812               | superfamily | t          | unaccepted    | Animalia | Mollusca   | Gastropoda | Littorinimorpha |                 |
   2308978 |            1 | Heteropodarke Hartmann-Schroeder, 1962 | genus       | f          | accepted      | Animalia | Annelida   | Polychaeta | Phyllodocida    | Heteropodarke   |
 107477570 |         1012 | Heteropodarke Hartmann-Schroeder, 1962 | genus       | f          | valid         | Animalia | Annelida   | Polychaeta | Aciculata       | Heteropodarke   |
 109710066 |         1007 | Heteropodarke Pleijel, 1999            | genus       | f          | accepted      | Animalia | Annelida   | Polychaeta | Phyllodocida    | Heteropodarke   |
 114382880 |           10 | Heteropodarke                          | genus       | f          | accepted name | Animalia | Annelida   | Polychaeta | Phyllodocida    | Heteropodarke   |
 101285069 |         1037 | Heteropodarke Hartmann-Schröder, 1962  | genus       | f          | valid         | Animalia | Annelida   | Polychaeta | Phyllodocida    | Heteropodarke   |
 110731768 |         1040 | Heteropodagrion                        | genus       | f          |               | Animalia | Arthropoda | Insecta    | Odonata         | Heteropodagrion |
 104900604 |           10 | Heteropodagrion                        | genus       | f          | accepted name | Animalia | Arthropoda | Insecta    | Odonata         | Heteropodagrion |
   1424363 |            1 | Heteropodagrion Selys, 1885            | genus       | f          | accepted      | Animalia | Arthropoda | Insecta    | Odonata         | Heteropodagrion |
 100505283 |            3 | Heteropoda Latreille, 1804             | genus       | f          | valid         | Animalia | Arthropoda | Arachnida  | Araneae         | Heteropoda      |
 107407278 |         1012 | Heteropodagrion Selys, 1885            | genus       | f          | valid         | Animalia | Arthropoda | Insecta    | Odonata         | Heteropodagrion |
   2161605 |            1 | Heteropoda Latreille, 1804             | genus       | f          | accepted      | Animalia | Arthropoda | Arachnida  | Araneae         | Heteropoda      |
 110855164 |         1056 | Heteropoda                             | genus       | f          |               | Animalia | Arthropoda | Arachnida  | Araneae         | Heteropoda      |
 107890490 |         1031 | Heteropoda                             | genus       | f          | to determine  | Animalia | Arthropoda | Arachnida  | Araneae         | Heteropoda      |
 102408054 |         1037 | Heteropoda Latreille, 1804             | genus       | f          | valid         | Animalia | Arthropoda | Arachnida  | Araneae         | Heteropoda      |
 101809934 |         1037 | Heteropodagrion Selys, 1885            | genus       | f          | valid         | Animalia | Arthropoda | Insecta    | Odonata         | Heteropodagrion |
 104922583 |           10 | Heteropoda                             | genus       | f          | accepted name | Animalia | Arthropoda | Arachnida  | Araneae         | Heteropoda      |
   3242038 |            1 | Heteropoda Nuttall, 1834               | genus       | f          | accepted      | Animalia | Chordata   | Aves       |                 | Heteropoda      |
 102408017 |         1037 | Heteropoda Nuttall, 1834               | genus       | f          |               | Animalia | Chordata   | Aves       |                 | Heteropoda      |
 100505274 |            3 | Heteropoda Nuttall, 1834               | genus       | f          |               | Animalia | Chordata   | Aves       |                 | Heteropoda      |
 105946632 |         1010 | Heteropodarke                          | genus       | f          |               | Metazoa  | Annelida   | Polychaeta | Phyllodocida    | Heteropodarke   |
 105981950 |         1010 | Heteropoda                             | genus       | f          |               | Metazoa  | Arthropoda | Arachnida  | Araneae         | Heteropoda      |
{noformat}





*Xenarthra*
{noformat}
    id     | checklist_fk |         scientific_name          |    rank    | is_synonym |  status  | kingdom  |   phylum   |  class   |   order    |     genus      | species
-----------+--------------+----------------------------------+------------+------------+----------+----------+------------+----------+------------+----------------+---------
 106641650 |         1010 | Xenarthra                        | superorder | f          |          | Metazoa  | Chordata   | Mammalia |            |                |
 111013750 |         1047 | Xenarthra                        | order      | f          |          | Animalia | Chordata   | Mammalia | Xenarthra  |                |
 102249046 |         1037 | Xenarthra                        | order      | f          |          | Animalia | Chordata   | Mammalia | Xenarthra  |                |
 100480906 |            3 | Xenarthra                        | order      | f          |          | Animalia | Chordata   | Mammalia | Xenarthra  |                |
 107752832 |         1013 | Xenarthra                        | order      | f          |          | Metazoa  | Chordata   |          |            |                |
 107363434 |         1012 | Xenarthra Cope, 1889             | order      | t          | invalid  |          |            |          |            |                |
 107907919 |         1003 | Xenarthra Cope, 1889             | suborder   | f          |          | Animalia |            | Mammalia | Edentata   |                |
 100482604 |            3 | Xenarthra Baly, 1861             | genus      | f          |          | Animalia | Arthropoda | Insecta  | Coleoptera | Xenarthra      |
 102278792 |         1037 | Xenarthra Baly, 1861             | genus      | f          |          | Animalia | Arthropoda | Insecta  | Coleoptera | Xenarthra      |
   5430855 |            1 | Xenarthra Baly, 1861             | genus      | f          | accepted | Animalia | Arthropoda | Insecta  | Coleoptera | Xenarthra      |
   4760413 |            1 | Xenarthracella Laboissière, 1940 | genus      | f          | accepted | Animalia | Arthropoda | Insecta  | Coleoptera | Xenarthracella |
 102311277 |         1037 | Xenarthracella Laboissière, 1940 | genus      | f          |          | Animalia | Arthropoda | Insecta  | Coleoptera | Xenarthracella |
 102937674 |         1037 | Xenarthra                        | genus      | f          |          |          |            |          |            | Xenarthra      |
 102937675 |         1037 | Xenarthracella                   | genus      | f          |          |          |            |          |            | Xenarthracella |

{noformat}

    

Author: mdoering@gbif.org
Created: 2012-05-23 17:32:25.603
Updated: 2012-05-23 17:32:25.603
        
We are getting to the conclusion that if no further (classification) hint is given in an occurrence record with a monomial only as the scientific name, there is hardly anything we can do which is trustworthy. It might be best to not match those records to anything at all.

Tagging datasets with a shared classification context might in a second step increase the number of matches again.